FLUTE usage
To filter interactions, run “run_FLUTE.py”. You must have Python3 installed.
The script takes several parameters:
MySQL username
MySQL password
Host name - “localhost” for MacOSX, desktop name for Windows
Database name (see step 3 from FLUTE DB installation instructions)
Input filename
Output filename for interactions
Output filename for scores
Input files must have the following headers:
RegulatedName
RegulatedID
RegulatedType
RegulatorName
RegulatorID
RegulatorType
PaperID
Output files include list of reading interactions that pass filtration, and the filtration scores for those filtered interactions.